Examples of NeuroML files
These examples demonstrate the capabilities of the current version of the NeuroML specifications.
We highlight the following 4 examples to illustrate the key elements at the various Levels:
- Level 1: CablesIncluded.xml (HTML) is an example of a cell with soma and dendrites specified in MorphML
- Level 2: NaChannel.xml (HTML) is a ChannelML example of a sodium channel based on the Hodgkin Huxley squid model.
- Level 2: MossyCellBiophys.xml (HTML) is a Level 2 cell description which includes the Biophysical properties of the cell.
- Level 3: CompleteNetwork.xml (HTML) is a description of a full network model including cell, synaptic mechanisms and network connections (in NetworkML).
Level 1: Anatomy only cells specified in MorphML
| Show HTML | Show XML | Current schema (v1.7.3) | All schemas | |
|---|---|---|---|---|
| CablesIncluded.xml | View | Source | Validate | Validate |
| Simple.morph.xml | View | Source | Validate | Validate |
| SimpleNeuroML.xml | View | Source | Validate | Validate |
| L23PyrFRB.morph.xml | View | Source | Validate | Validate |
Level 2: ChannelML and biophysical cell models
Level 3: Networks of cells specified using NetworkML
| Show HTML | Show XML | Current schema (v1.7.3) | All schemas | |
|---|---|---|---|---|
| SimpleNetworkInstance.xml | View | Source | Validate | Validate |
| ExtendNetSpec.xml | View | Source | Validate | Validate |
| OldNetworkInstance.xml | View | Source | Validate | Validate |
| DistributedNetwork.xml | View | Source | Validate | Validate |
| 2DGridTemplate.xml | View | Source | Validate | Validate |
| SimpleNetworkTemplate.xml | View | Source | Validate | Validate |
| CompleteNetwork.xml | View | Source | Validate | Validate |
| Spiral.xml | View | Source | Validate | Validate |
| NonSpatialGridTemplate.xml | View | Source | Validate | Validate |
Miscellaneous XML files
| Show HTML | Show XML | Current schema (v1.7.3) | All schemas | |
|---|---|---|---|---|
| BadMorphML.xml | View | Source | Validate | Validate |
| BadXML.xml | View | Source | Validate | Validate |
| OldChannelDesc.xml | View | Source | Validate | Validate |
Level 2: ChannelML based synaptic mechanisms
| Show HTML | Show XML | Current schema (v1.7.3) | All schemas | |
|---|---|---|---|---|
| SingleExpSyn.xml | View | Source | Validate | Validate |
| DoubExpSyn.xml | View | Source | Validate | Validate |
| MultiDecaySyn.xml | View | Source | Validate | Validate |
| AlphaSyn.xml | View | Source | Validate | Validate |
| ElectSyn.xml | View | Source | Validate | Validate |
| ComplexSynapse.xml | View | Source | Validate | Validate |
| NMDA.xml | View | Source | Validate | Validate |
| STPSynTest.xml | View | Source | Validate | Validate |
