| NeuroML |
The NeuroML home page, where background information and contacts can be found. |
| NeuroML @ Sourceforge |
The NeuroML project in Sourceforge, where development work is carried out. The mailing lists are the main source of up to date information. |
| NeuroML SVN repository |
The SVN repository in Sourceforge, where the latest files for the project are found. |
| MorphML |
The MorphML homepage, with background information on the neuronal morphology part of the standard.
Note though that the latest version of the standard is always found here. |
| NeuroML API |
A Java API generated from NeuroML schemas to be used for the development of new neural simulators and to connect with pre-existing simulators.
Check the mailing lists there for current activities. |
| NEURON |
The NEURON simulation environment has been used for many years and is one of the main target platforms
for a standard facilitating exchange of neuronal data. Version 6.1 of NEURON can import and export (from ModelView) model specifications in NeuroML format. For the latest files for importing/exporting from NEURON
see here
|
| GENESIS |
GENESIS is a commonly used neuronal simulation environment and is also a main target platform
for the NeuroML/MorphML specifications. Cell morphologies and channel mechanisms in NeuroML format can be changed into
GENESIS script either using this site or through neuroConstruct. |
| MOOSE |
MOOSE is the Multiscale Object-Oriented Simulation Environment. It is the base and numerical core for large, detailed simulations including Computational Neuroscience and Systems Biology. NeuroML support is planned for model specifications in the new system. |
| Neurospaces |
Neurospaces is a middle-ware data container for large and complex neuronal models. Neurospaces will be able to import and export NeuroML files, facilitating exchange of models and ideas. |
| Neuromantic |
Neuromantic is a freeware tool for neuronal reconstruction (similar in some ways to part of Neurolucida's functionality).
Neuromantic mainly uses SWC/Cvapp format, but the latest version can import and export MorphML. |
| PSICS |
pSICS - the Parallel Stochastic Ion Channel Simulator. Support for ChannelML and MorphML is planned in future releases. |
| neuroConstruct |
neuroConstruct is a Java based application for constructing 3D networks of biologically realistic neurons, and the current version can generate code for the NEURON and GENESIS platforms.
Support for MorphML, ChannelML and NetworkML is included in the latest version. |
| For questions or comments about this validation application please contact Padraig Gleeson (p.gleeson -at- ucl.ac.uk) |
